diff --git a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala index 10a5cd8d0f8ed0c7e52da5583fe4c6b2b129f45b..f2785b6a2766a1fe7ce3e0a106955b1b4f28d151 100644 --- a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala +++ b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala @@ -112,7 +112,7 @@ class Gentrap(val root: Configurable) extends QScript case NonSpecific => "no" case Dutp => "reverse" case _ => null - }), + })), "merge_strategy" -> "preprocessmergesam", "gsnap" -> Map( "novelsplicing" -> 1,