Commit 315f5230 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added gtf to star index generation

parent 53cc5101
......@@ -238,6 +238,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
starIndex.outputDir = starDir
starIndex.reference = createLinks(starDir)
starIndex.runmode = "genomeGenerate"
starIndex.sjdbGTFfile = gtfFile
configDeps :+= starIndex.jobOutputFile
outputConfig += "star" -> Map(
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