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biopet.biopet
Commits
310b07ef
Commit
310b07ef
authored
Sep 30, 2015
by
Peter van 't Hof
Browse files
Removed test
parent
ade862a4
Changes
2
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public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetFifoPipe.scala
View file @
310b07ef
...
...
@@ -54,7 +54,7 @@ class BiopetFifoPipe(val root: Configurable,
}
override
def
beforeCmd
()
:
Unit
=
{
commands
.
foreach
{
cmd
=>
commands
.
foreach
{
cmd
=>
cmd
.
beforeGraph
()
cmd
.
internalBeforeGraph
()
cmd
.
beforeCmd
()
...
...
public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala
View file @
310b07ef
...
...
@@ -82,7 +82,7 @@ class FlexiprepTest extends TestNGSuite with Matchers {
//flexiprep.functions.count(_.isInstanceOf[Zcat]) shouldBe (if (zipped) if (paired) 2 else 1 else 0)
//flexiprep.functions.count(_.isInstanceOf[SeqtkSeq]) shouldBe (if (paired) 2 else 1)
//flexiprep.functions.count(_.isInstanceOf[Cutadapt]) shouldBe (if (skipClip) 0 else if (paired) 2 else 1)
flexiprep
.
functions
.
count
(
_
.
isInstanceOf
[
FastqSync
])
shouldBe
(
if
(
paired
)
1
else
0
)
//
flexiprep.functions.count(_.isInstanceOf[FastqSync]) shouldBe (if (paired) 1 else 0)
//flexiprep.functions.count(_.isInstanceOf[Sickle]) shouldBe (if (skipTrim) 0 else 1)
//flexiprep.functions.count(_.isInstanceOf[Gzip]) shouldBe (if (skipClip && skipTrim) 0 else if (paired) 2 else 1)
}
...
...
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