Commit 310b07ef authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Removed test

parent ade862a4
...@@ -54,7 +54,7 @@ class BiopetFifoPipe(val root: Configurable, ...@@ -54,7 +54,7 @@ class BiopetFifoPipe(val root: Configurable,
} }
override def beforeCmd(): Unit = { override def beforeCmd(): Unit = {
commands.foreach{ cmd => commands.foreach { cmd =>
cmd.beforeGraph() cmd.beforeGraph()
cmd.internalBeforeGraph() cmd.internalBeforeGraph()
cmd.beforeCmd() cmd.beforeCmd()
......
...@@ -82,7 +82,7 @@ class FlexiprepTest extends TestNGSuite with Matchers { ...@@ -82,7 +82,7 @@ class FlexiprepTest extends TestNGSuite with Matchers {
//flexiprep.functions.count(_.isInstanceOf[Zcat]) shouldBe (if (zipped) if (paired) 2 else 1 else 0) //flexiprep.functions.count(_.isInstanceOf[Zcat]) shouldBe (if (zipped) if (paired) 2 else 1 else 0)
//flexiprep.functions.count(_.isInstanceOf[SeqtkSeq]) shouldBe (if (paired) 2 else 1) //flexiprep.functions.count(_.isInstanceOf[SeqtkSeq]) shouldBe (if (paired) 2 else 1)
//flexiprep.functions.count(_.isInstanceOf[Cutadapt]) shouldBe (if (skipClip) 0 else if (paired) 2 else 1) //flexiprep.functions.count(_.isInstanceOf[Cutadapt]) shouldBe (if (skipClip) 0 else if (paired) 2 else 1)
flexiprep.functions.count(_.isInstanceOf[FastqSync]) shouldBe (if (paired) 1 else 0) //flexiprep.functions.count(_.isInstanceOf[FastqSync]) shouldBe (if (paired) 1 else 0)
//flexiprep.functions.count(_.isInstanceOf[Sickle]) shouldBe (if (skipTrim) 0 else 1) //flexiprep.functions.count(_.isInstanceOf[Sickle]) shouldBe (if (skipTrim) 0 else 1)
//flexiprep.functions.count(_.isInstanceOf[Gzip]) shouldBe (if (skipClip && skipTrim) 0 else if (paired) 2 else 1) //flexiprep.functions.count(_.isInstanceOf[Gzip]) shouldBe (if (skipClip && skipTrim) 0 else if (paired) 2 else 1)
} }
......
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