Added testing to pipeline summary values

2d9ade1e · Peter van 't Hof · 81e75fbd · 2d9ade1e
Commit 2d9ade1e authored Sep 28, 2016 by Peter van 't Hof
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basty/src/test/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTest.scala ...scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTest.scala +3 -0

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--- a/basty/src/test/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTest.scala
+++ b/basty/src/test/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTest.scala
@@ -89,6 +89,9 @@ class BastyTest extends TestNGSuite with Matchers {

      pipeline.summarySettings.get("boot_runs") shouldBe Some(bootRuns.getOrElse(100))

+      pipeline.summaryFile shouldBe new File(BastyTest.outputDir, "Basty.summary.json")
+      pipeline.summaryFiles shouldBe Map()
+
      pipeline.samples foreach {
        case (sampleId, sample) =>
          sample.summarySettings shouldBe Map()