diff --git a/carp/src/test/scala/nl/lumc/sasc/biopet/pipelines/carp/CarpTest.scala b/carp/src/test/scala/nl/lumc/sasc/biopet/pipelines/carp/CarpTest.scala
index 3ba85bccab141d308714e0dd1ec109262f2bc834..37da9198c751633f5a952f1803843fc6065730a4 100644
--- a/carp/src/test/scala/nl/lumc/sasc/biopet/pipelines/carp/CarpTest.scala
+++ b/carp/src/test/scala/nl/lumc/sasc/biopet/pipelines/carp/CarpTest.scala
@@ -125,7 +125,7 @@ object CarpTest {
     "bwa" -> Map("exe" -> "test"),
     "samtools" -> Map("exe" -> "test"),
     "macs2" -> Map("exe" -> "test"),
-    "igvtools" -> Map("exe" -> "test"),
+    "igvtools" -> Map("exe" -> "test", "igvtools_jar" -> "test"),
     "wigtobigwig" -> Map("exe" -> "test"),
     "md5sum" -> Map("exe" -> "test")
   )
diff --git a/gentrap/src/test/scala/nl/lumc/sasc/biopet/pipelines/gentrap/GentrapTest.scala b/gentrap/src/test/scala/nl/lumc/sasc/biopet/pipelines/gentrap/GentrapTest.scala
index 4f2ae6ea2121b6427a3086e28ba9e46085a8bf27..d3344acfa3002d3e54074d3002b86bfcfb348bb0 100644
--- a/gentrap/src/test/scala/nl/lumc/sasc/biopet/pipelines/gentrap/GentrapTest.scala
+++ b/gentrap/src/test/scala/nl/lumc/sasc/biopet/pipelines/gentrap/GentrapTest.scala
@@ -194,6 +194,7 @@ object GentrapTest {
     "ribosome_refflat" -> (outputDir + File.separator + "ref.fa"),
     "varscan_jar" -> "test",
     "rscript" -> Map("exe" -> "test"),
+    "igvtools" -> Map("exe" -> "test", "igvtools_jar" -> "test"),
     "gatk_jar" -> "test"
   ) ++ Seq(
       // fastqc executables
@@ -203,7 +204,7 @@ object GentrapTest {
       // gentrap executables
       "cufflinks", "htseqcount", "grep", "pdflatex", "rscript", "tabix", "bgzip", "bedtoolscoverage", "md5sum",
       // bam2wig executables
-      "igvtools", "wigtobigwig"
+      "wigtobigwig"
     ).map { case exe => exe -> Map("exe" -> "test") }.toMap
 
   val sample1: Map[String, Any] = Map(
diff --git a/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTest.scala b/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTest.scala
index f036640ebb8700232b0b6f057cc45f48b64e3a36..79ae1b0137baf60bca030ea90fe2929864a2628f 100644
--- a/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTest.scala
+++ b/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTest.scala
@@ -194,7 +194,7 @@ object MultisampleMappingTestTrait {
     "cutadapt" -> Map("exe" -> "test"),
     "bwa" -> Map("exe" -> "test"),
     "samtools" -> Map("exe" -> "test"),
-    "igvtools" -> Map("exe" -> "test"),
+    "igvtools" -> Map("exe" -> "test", "igvtools_jar" -> "test"),
     "wigtobigwig" -> Map("exe" -> "test"),
     "kraken" -> Map("exe" -> "test", "db" -> "test"),
     "krakenreport" -> Map("exe" -> "test", "db" -> "test"),
diff --git a/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTest.scala b/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTest.scala
index ef62700ca687b0153c21fa75510c867e06b7c0b4..e0d04818a06f898a410bc648fcb866a7a67f6798 100644
--- a/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTest.scala
+++ b/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTest.scala
@@ -210,7 +210,7 @@ object ShivaTest {
     "bwa" -> Map("exe" -> "test"),
     "samtools" -> Map("exe" -> "test"),
     "macs2" -> Map("exe" -> "test"),
-    "igvtools" -> Map("exe" -> "test"),
+    "igvtools" -> Map("exe" -> "test", "igvtools_jar" -> "test"),
     "wigtobigwig" -> Map("exe" -> "test"),
     "md5sum" -> Map("exe" -> "test"),
     "bgzip" -> Map("exe" -> "test"),
diff --git a/tinycap/src/test/scala/nl/lumc/sasc/biopet/pipelines/tinycap/TinyCapTest.scala b/tinycap/src/test/scala/nl/lumc/sasc/biopet/pipelines/tinycap/TinyCapTest.scala
index b52e9696ca69bedada90d14453dc6f8fb9c62ed3..ac6733f345aa3236e6b04ccf16ba8e134a26d790 100644
--- a/tinycap/src/test/scala/nl/lumc/sasc/biopet/pipelines/tinycap/TinyCapTest.scala
+++ b/tinycap/src/test/scala/nl/lumc/sasc/biopet/pipelines/tinycap/TinyCapTest.scala
@@ -134,7 +134,7 @@ object TinyCapTest {
     "cutadapt" -> Map("exe" -> "test"),
     "bowtie" -> Map("exe" -> "test"),
     "htseqcount" -> Map("exe" -> "test"),
-    "igvtools" -> Map("exe" -> "test"),
+    "igvtools" -> Map("exe" -> "test", "igvtools_jar" -> "test"),
     "wigtobigwig" -> Map("exe" -> "test")
   )