From 2c82ed9b6345c1708fcf61996ff785ba6c88e081 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 10 Feb 2016 15:40:42 +0100
Subject: [PATCH] Fix code warnings
---
.../scala/nl/lumc/sasc/biopet/utils/rscript/Rscript.scala | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/rscript/Rscript.scala b/public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/rscript/Rscript.scala
index ec6623107..d8149c96d 100644
--- a/public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/rscript/Rscript.scala
+++ b/public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/rscript/Rscript.scala
@@ -23,6 +23,8 @@ import nl.lumc.sasc.biopet.utils.config.Configurable
import scala.sys.process.{ Process, ProcessLogger }
/**
+ * Trait for rscripts, can be used to execute rscripts locally
+ *
* Created by pjvanthof on 13/09/15.
*/
trait Rscript extends Configurable {
@@ -42,12 +44,11 @@ trait Rscript extends Configurable {
script = script.getAbsoluteFile
} else {
val rScript: File = dir match {
- case Some(dir) => new File(dir, script.getName)
- case _ => {
+ case Some(d) => new File(d, script.getName)
+ case _ =>
val file = File.createTempFile(script.getName, ".R")
file.deleteOnExit()
file
- }
}
if (!rScript.getAbsoluteFile.getParentFile.exists) rScript.getParentFile.mkdirs
--
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