From 28b42baf1fe0af0bfa87014d5341a8fabb1889d6 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 16 Feb 2015 19:32:28 +0100
Subject: [PATCH] Added SampleLibraryTag
---
.../sasc/biopet/core/SampleLibraryTag.scala | 21 +++++++++++++++++++
1 file changed, 21 insertions(+)
create mode 100644 public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/SampleLibraryTag.scala
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/SampleLibraryTag.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/SampleLibraryTag.scala
new file mode 100644
index 000000000..860a4464e
--- /dev/null
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/SampleLibraryTag.scala
@@ -0,0 +1,21 @@
+package nl.lumc.sasc.biopet.core
+
+import nl.lumc.sasc.biopet.core.config.Configurable
+import org.broadinstitute.gatk.utils.commandline.Argument
+
+/**
+ * Created by pjvan_thof on 2/16/15.
+ */
+trait SampleLibraryTag extends Configurable {
+ @Argument(doc = "Sample ID", shortName = "sample", required = false)
+ var sampleId: Option[String] = root match {
+ case tag: SampleLibraryTag => tag.sampleId
+ case _ => None
+ }
+
+ @Argument(doc = "Library ID", shortName = "library", required = false)
+ var libId: Option[String] = root match {
+ case tag: SampleLibraryTag => tag.libId
+ case _ => None
+ }
+}
--
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