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biopet.biopet
Commits
2844eee6
Commit
2844eee6
authored
Dec 07, 2016
by
Peter van 't Hof
Browse files
Added intermediate
parent
443efddc
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/PipelineStatus.scala
View file @
2844eee6
...
...
@@ -55,7 +55,7 @@ object PipelineStatus extends ToolCommand {
val
jobsRunning
=
jobs
.
filterNot
(
x
=>
jobDone
(
x
.
_1
))
.
filterNot
(
x
=>
jobFailed
(
x
.
_1
))
.
filter
(
_
.
_2
.
stdoutFile
.
exists
()).
map
(
_
.
_1
).
toList
.
filter
(
_
.
_2
.
stdoutFile
.
exists
()).
map
(
_
.
_1
).
toList
val
jobsDeps
=
jobs
.
map
(
x
=>
x
.
_1
->
(
x
.
_2
.
dependsOnJobs
match
{
case
l
:
List
[
_
]
=>
l
.
map
(
_
.
toString
)
...
...
@@ -127,9 +127,10 @@ object PipelineStatus extends ToolCommand {
.
filterNot
(
jobDone
)
.
filterNot
(
jobsRunning
.
contains
)
.
foreach
(
x
=>
writer
.
println
(
s
" $x [color = orange]"
))
jobsRunning
.
filter
(
jobsDeps
.
contains
)
.
foreach
(
x
=>
writer
.
println
(
s
" $x [color = blue]"
))
jobs
.
filter
(
x
=>
jobsDeps
.
contains
(
x
.
_1
))
.
filter
(
_
.
_2
.
intermediate
)
.
foreach
(
x
=>
writer
.
println
(
s
" ${x._1} [style = dashed]"
))
jobsDeps
.
foreach
{
case
(
a
,
b
)
=>
b
.
foreach
(
c
=>
writer
.
println
(
s
" $c -> $a;"
))
}
writer
.
println
(
"}"
)
writer
.
close
()
...
...
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