From 2838b39a2b7e5753fe69ffba64cef4655498cc08 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 3 Feb 2015 17:51:41 +0100
Subject: [PATCH] Change on empty string check
---
.../lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
index 91f156ac4..97cc2bd46 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
@@ -60,7 +60,7 @@ trait BiopetCommandLineFunctionTrait extends CommandLineFunction with Configurab
if (vmem.isEmpty) {
vmem = config("vmem")
- if (vmem.isEmpty && !defaultVmem.isEmpty) vmem = Some(defaultVmem)
+ if (vmem.isEmpty && defaultVmem.nonEmpty) vmem = Some(defaultVmem)
}
if (vmem != null) jobResourceRequests :+= "h_vmem=" + vmem
jobName = configName + ":" + firstOutput.getName
--
GitLab