Commit 2705817e authored by Sander Bollen's avatar Sander Bollen

Merge branch 'fix-BIOPET-488' into 'develop'

Fixing BIOPET-488



See merge request !490
parents 21fa48ed e2b1d5cb
......@@ -43,6 +43,7 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
override def beforeGraph() {
super.beforeGraph()
deps :+= new File(bamFile.getAbsolutePath.replaceAll(".bam$", ".bai"))
jobOutputFile = new File(outputDir, ".bamstats.out")
if (reference == null) reference = referenceFasta()
}
......
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