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biopet.biopet
Commits
2705817e
Commit
2705817e
authored
Dec 06, 2016
by
Sander Bollen
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Merge branch 'fix-BIOPET-488' into 'develop'
Fixing BIOPET-488 See merge request !490
parents
21fa48ed
e2b1d5cb
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
...scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
View file @
2705817e
...
...
@@ -43,6 +43,7 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
override
def
beforeGraph
()
{
super
.
beforeGraph
()
deps
:+=
new
File
(
bamFile
.
getAbsolutePath
.
replaceAll
(
".bam$"
,
".bai"
))
jobOutputFile
=
new
File
(
outputDir
,
".bamstats.out"
)
if
(
reference
==
null
)
reference
=
referenceFasta
()
}
...
...
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