diff --git a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala index 78b37da50cceae2845ea84ea773d17381572f2cf..cb231e7b322943598eed38ca4bce34f719c13567 100644 --- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala +++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala @@ -155,7 +155,7 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu super.beforeGraph() if (!cache && !database) { Logging.addError("Must either set 'cache' or 'database' to true for VariantEffectPredictor") - } else if (cache && dir.isEmpty) { + } else if (cache && dir.isEmpty && dirCache.isEmpty) { Logging.addError("Must supply 'dir_cache' to cache for VariantEffectPredictor") } if (statsText) _summary = new File(output.getAbsolutePath + "_summary.txt")