From 253f3d6a3f43be4373e50b7a2115caf722d6a49f Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 18 Sep 2015 11:40:58 +0200
Subject: [PATCH] Fix protected package (cherry picked from commit a715d47)
---
.../scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala b/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala
index 4e725bb0b..9155e7dba 100644
--- a/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala
+++ b/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala
@@ -8,7 +8,7 @@ package nl.lumc.sasc.biopet
import nl.lumc.sasc.biopet.utils.{ BiopetExecutable, MainCommand }
object BiopetExecutableProtected extends BiopetExecutable {
- def pipelines: List[MainCommand] = BiopetExecutablePublic.pipelines ::: List(
+ def pipelines: List[MainCommand] = BiopetExecutablePublic.publicPipelines ::: List(
nl.lumc.sasc.biopet.pipelines.gatk.Shiva,
nl.lumc.sasc.biopet.pipelines.gatk.ShivaVariantcalling,
nl.lumc.sasc.biopet.pipelines.gatk.Basty)
--
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