diff --git a/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala b/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala index 4e725bb0b1e2002a323cc22f38c86b53ca4f14af..9155e7dbacf4fd624694ac06a1ddf24c69071afe 100644 --- a/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala +++ b/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala @@ -8,7 +8,7 @@ package nl.lumc.sasc.biopet import nl.lumc.sasc.biopet.utils.{ BiopetExecutable, MainCommand } object BiopetExecutableProtected extends BiopetExecutable { - def pipelines: List[MainCommand] = BiopetExecutablePublic.pipelines ::: List( + def pipelines: List[MainCommand] = BiopetExecutablePublic.publicPipelines ::: List( nl.lumc.sasc.biopet.pipelines.gatk.Shiva, nl.lumc.sasc.biopet.pipelines.gatk.ShivaVariantcalling, nl.lumc.sasc.biopet.pipelines.gatk.Basty)