Commit 24a1e5b0 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Changed default vmem

parent 61af28f8
......@@ -6,7 +6,7 @@ import org.broadinstitute.gatk.queue.extensions.gatk.CommandLineGATK
trait GatkGeneral extends CommandLineGATK with BiopetJavaCommandLineFunction {
memoryLimit = Option(2)
override val defaultVmem = "4G"
override val defaultVmem = "6G"
if (config.contains("intervals", submodule = "gatk")) intervals = config("intervals", submodule = "gatk").getFileList
if (config.contains("exclude_intervals", submodule = "gatk")) excludeIntervals = config("exclude_intervals", submodule = "gatk").getFileList
......
......@@ -4,7 +4,8 @@ import java.io.File
import nl.lumc.sasc.biopet.core.config.Configurable
class RealignerTargetCreator(val root: Configurable) extends org.broadinstitute.gatk.queue.extensions.gatk.RealignerTargetCreator with GatkGeneral {
override val defaultVmem = "5G"
override val defaultVmem = "6G"
memoryLimit = Some(2.5)
if (config.contains("scattercount")) scatterCount = config("scattercount")
......
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