From 2491e6552ea90454b29a5438d7f6cc20f7f52bc0 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Mon, 9 May 2016 11:02:18 +0200
Subject: [PATCH] remove dummy code
---
.../lumc/sasc/biopet/pipelines/shiva/ShivaVariantcalling.scala | 2 --
1 file changed, 2 deletions(-)
diff --git a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcalling.scala b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcalling.scala
index 3b276fa72..b2055a09f 100644
--- a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcalling.scala
+++ b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcalling.scala
@@ -80,8 +80,6 @@ class ShivaVariantcalling(val root: Configurable) extends QScript
}).flatten.toList.sortBy(_.prio)
}
- callers.filter(_.isInstanceOf[HaplotypeCallerGvcf])
-
/** This will add jobs for this pipeline */
def biopetScript(): Unit = {
require(inputBams.nonEmpty, "No input bams found")
--
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