Added shiva to executable

public/biopet-public-package/pom.xml

@@ -95,6 +95,11 @@
             <artifactId>Toucan</artifactId>
             <version>${project.version}</version>
         </dependency>
+        <dependency>
+            <groupId>nl.lumc.sasc</groupId>
+            <artifactId>Shiva</artifactId>
+            <version>${project.version}</version>
+        </dependency>
     </dependencies>
     <build>
         <plugins>

public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala

@@ -26,7 +26,8 @@ object BiopetExecutablePublic extends BiopetExecutable {
     nl.lumc.sasc.biopet.pipelines.bamtobigwig.Bam2Wig,
     nl.lumc.sasc.biopet.pipelines.kopisu.ConiferPipeline,
     nl.lumc.sasc.biopet.pipelines.carp.Carp,
-    nl.lumc.sasc.biopet.pipelines.toucan.Toucan
+    nl.lumc.sasc.biopet.pipelines.toucan.Toucan,
+    nl.lumc.sasc.biopet.pipelines.shiva.Shiva
   )
 
   def tools: List[MainCommand] = List(