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biopet.biopet
Commits
238fb168
Commit
238fb168
authored
Dec 04, 2015
by
Peter van 't Hof
Browse files
fixed typo
parent
ea348cd6
Changes
1
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public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala
View file @
238fb168
...
...
@@ -46,7 +46,7 @@ class GearsSingle(val root: Configurable) extends QScript with SummaryQScript wi
/** Executed before running the script */
def
init
()
:
Unit
=
{
require
(
fastqR1
.
isDefined
||
bamFile
.
isDefined
,
"Please specify fastq-file(s) or bam file"
)
require
(
fastqR1
.
isDefined
!=
bamFile
.
isDefined
,
"Provide either a bam file or
l
a R1 file"
)
require
(
fastqR1
.
isDefined
!=
bamFile
.
isDefined
,
"Provide either a bam file or a R1
/R2
file"
)
if
(
outputName
==
null
)
{
if
(
fastqR1
.
isDefined
)
outputName
=
fastqR1
.
map
(
_
.
getName
...
...
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