From 233d9a9b795e1005f7227a23cdd0f2f513143a8e Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 24 Dec 2015 18:07:21 +0100
Subject: [PATCH] Changed file names
---
.../scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
index ca2c777f9..523465e13 100644
--- a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
+++ b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
@@ -46,8 +46,8 @@ class Gears(val root: Configurable) extends QScript with MultiSampleQScript { qs
require(closedOtuTables.size == closedOtuMaps.size)
if (closedOtuTables.nonEmpty) {
val closedDir = new File(outputDir, "qiime_closed_reference")
- val closedOtuTable = new File(closedDir, "closed.biom")
- val closedOtuMap = new File(closedDir, "closed.map.txt")
+ val closedOtuTable = new File(closedDir, "otu_table.biom")
+ val closedOtuMap = new File(closedDir, "otu_map.txt")
if (closedOtuTables.size > 1) {
val mergeTables = new MergeOtuTables(qscript)
--
GitLab