From 225b0caebd296658be0d68e5d45a178294ae750c Mon Sep 17 00:00:00 2001
From: Wai Yi Leung <w.y.leung@lumc.nl>
Date: Tue, 19 Jan 2016 17:11:40 +0100
Subject: [PATCH] Remove pindel from the list of default callers
---
.../nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala
index 13772de16..d65c2dfd4 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala
@@ -43,7 +43,7 @@ class ShivaSvCalling(val root: Configurable) extends QScript with SummaryQScript
}
/** Variantcallers requested by the config */
- protected val configCallers: Set[String] = config("sv_callers", default = Set("breakdancer", "clever", "delly", "pindel"))
+ protected val configCallers: Set[String] = config("sv_callers", default = Set("breakdancer", "clever", "delly"))
/** This will add jobs for this pipeline */
def biopetScript(): Unit = {
--
GitLab