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Commit 204c72d0 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix for BIOPET-398

parent 8cb19f0f
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gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala
View file @ 204c72d0
......@@ -41,8 +41,8 @@ class GearsSingle(val root: Configurable) extends QScript with SummaryQScript wi
@Argument(required = false)
var outputName: String = _
lazy val krakenScript = if (config("gears_use_kraken", default = true)) Some(new GearsKraken(this)) else None
lazy val centrifugeScript = if (config("gears_use_centrifuge", default = false)) Some(new GearsCentrifuge(this)) else None
lazy val krakenScript = if (config("gears_use_kraken", default = false)) Some(new GearsKraken(this)) else None
lazy val centrifugeScript = if (config("gears_use_centrifuge", default = true)) Some(new GearsCentrifuge(this)) else None
lazy val qiimeRatx = if (config("gears_use_qiime_rtax", default = false)) Some(new GearsQiimeRtax(this)) else None
lazy val qiimeClosed = if (config("gears_use_qiime_closed", default = false)) Some(new GearsQiimeClosed(this)) else None
lazy val qiimeOpen = if (config("gears_use_qiime_open", default = false)) Some(new GearsQiimeOpen(this)) else None
......
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