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biopet.biopet
Commits
204c72d0
Commit
204c72d0
authored
Nov 04, 2016
by
Peter van 't Hof
Browse files
Fix for BIOPET-398
parent
8cb19f0f
Changes
1
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Inline
Side-by-side
gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala
View file @
204c72d0
...
...
@@ -41,8 +41,8 @@ class GearsSingle(val root: Configurable) extends QScript with SummaryQScript wi
@Argument
(
required
=
false
)
var
outputName
:
String
=
_
lazy
val
krakenScript
=
if
(
config
(
"gears_use_kraken"
,
default
=
tru
e
))
Some
(
new
GearsKraken
(
this
))
else
None
lazy
val
centrifugeScript
=
if
(
config
(
"gears_use_centrifuge"
,
default
=
fals
e
))
Some
(
new
GearsCentrifuge
(
this
))
else
None
lazy
val
krakenScript
=
if
(
config
(
"gears_use_kraken"
,
default
=
fals
e
))
Some
(
new
GearsKraken
(
this
))
else
None
lazy
val
centrifugeScript
=
if
(
config
(
"gears_use_centrifuge"
,
default
=
tru
e
))
Some
(
new
GearsCentrifuge
(
this
))
else
None
lazy
val
qiimeRatx
=
if
(
config
(
"gears_use_qiime_rtax"
,
default
=
false
))
Some
(
new
GearsQiimeRtax
(
this
))
else
None
lazy
val
qiimeClosed
=
if
(
config
(
"gears_use_qiime_closed"
,
default
=
false
))
Some
(
new
GearsQiimeClosed
(
this
))
else
None
lazy
val
qiimeOpen
=
if
(
config
(
"gears_use_qiime_open"
,
default
=
false
))
Some
(
new
GearsQiimeOpen
(
this
))
else
None
...
...
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