Commit 1f6b6d87 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix on args order

parent 3c616b75
......@@ -65,9 +65,6 @@ class Bwa(val root: Configurable) extends BiopetCommandLineFunction {
optional("-R", R) +
conditional(M, "-M") +
conditional(S, "-S") +
required(reference) +
required(R1) +
optional(R2) +
optional("-w", w) +
optional("-d", d) +
optional("-c", c) +
......@@ -91,6 +88,9 @@ class Bwa(val root: Configurable) extends BiopetCommandLineFunction {
conditional(C, "-C") +
conditional(Y, "-Y") +
optional("-I", I) +
required(reference) +
required(R1) +
optional(R2) +
" > " + required(output)
}
}
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