Commit 1ef9b735 authored by pjvan_thof's avatar pjvan_thof

Bump to 0.9.0-RC1

parent 6a6c8673
...@@ -26,7 +26,7 @@ ...@@ -26,7 +26,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -31,7 +31,7 @@ ...@@ -31,7 +31,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
...@@ -38,7 +38,7 @@ ...@@ -38,7 +38,7 @@
<dependency> <dependency>
<groupId>org.broadinstitute.gatk</groupId> <groupId>org.broadinstitute.gatk</groupId>
<artifactId>gatk-queue</artifactId> <artifactId>gatk-queue</artifactId>
<version>3.6</version> <version>0.9.0</version>
<exclusions> <exclusions>
<exclusion> <exclusion>
<groupId>org.broadinstitute.gatk</groupId> <groupId>org.broadinstitute.gatk</groupId>
...@@ -49,7 +49,7 @@ ...@@ -49,7 +49,7 @@
<dependency> <dependency>
<groupId>org.broadinstitute.gatk</groupId> <groupId>org.broadinstitute.gatk</groupId>
<artifactId>gatk-queue-extensions-public</artifactId> <artifactId>gatk-queue-extensions-public</artifactId>
<version>3.6</version> <version>0.9.0</version>
</dependency> </dependency>
</dependencies> </dependencies>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
......
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
......
...@@ -21,8 +21,7 @@ if [ ! $1 ] ; then ...@@ -21,8 +21,7 @@ if [ ! $1 ] ; then
exit 1 exit 1
fi fi
for POM in `find $DIR -name "pom.xml"`
do do
mvn -f $POM versions:set -DnewVersion=$1 -DgenerateBackupPoms=false mvn -f $DIR/pom.xml versions:set -DnewVersion=$1 -DgenerateBackupPoms=false
done done
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -22,7 +22,7 @@ ...@@ -22,7 +22,7 @@
<groupId>path.to.your</groupId> <groupId>path.to.your</groupId>
<artifactId>MyProject</artifactId> <artifactId>MyProject</artifactId>
<version>0.8.0-SNAPSHOT</version> <version>0.9.0</version>
<properties> <properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
......
...@@ -27,7 +27,7 @@ ...@@ -27,7 +27,7 @@
<artifactId>ExternalExample</artifactId> <artifactId>ExternalExample</artifactId>
<!--TODO: replace version, for a new pipeline it's advised to start with '0.1.0-SNAPSHOT' --> <!--TODO: replace version, for a new pipeline it's advised to start with '0.1.0-SNAPSHOT' -->
<version>0.8.0-SNAPSHOT</version> <version>0.9.0</version>
<properties> <properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
...@@ -56,19 +56,19 @@ ...@@ -56,19 +56,19 @@
<artifactId>BiopetCore</artifactId> <artifactId>BiopetCore</artifactId>
<!--TODO: replace version of pipeline to a fixed version --> <!--TODO: replace version of pipeline to a fixed version -->
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetExtensions</artifactId> <artifactId>BiopetExtensions</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Shiva</artifactId> <artifactId>Shiva</artifactId>
<!--TODO: replace version of pipeline to a fixed version --> <!--TODO: replace version of pipeline to a fixed version -->
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
</dependency> </dependency>
</dependencies> </dependencies>
......
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
......
...@@ -26,7 +26,7 @@ ...@@ -26,7 +26,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -26,7 +26,7 @@ ...@@ -26,7 +26,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<name>Biopet</name> <name>Biopet</name>
<packaging>pom</packaging> <packaging>pom</packaging>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<modules> <modules>
<module>gatk</module> <module>gatk</module>
......
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
......
...@@ -21,7 +21,7 @@ ...@@ -21,7 +21,7 @@
<parent> <parent>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
</parent> </parent>
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
......
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<parent> <parent>
<groupId>nl.lumc.sasc</groupId> <groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId> <artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version> <version>0.9.0-RC1</version>
<relativePath>../</relativePath> <relativePath>../</relativePath>
</parent> </parent>
......
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