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biopet.biopet
Commit 1ef9b735 authored by pjvan_thof's avatar pjvan_thof
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Bump to 0.9.0-RC1

parent 6a6c8673
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Showing with 31 additions and 32 deletions
bam2wig/pom.xml
View file @ 1ef9b735
......@@ -26,7 +26,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
bammetrics/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
basty/pom.xml
View file @ 1ef9b735
......@@ -31,7 +31,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
biopet-core/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
......@@ -38,7 +38,7 @@
<dependency>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>gatk-queue</artifactId>
<version>3.6</version>
<version>0.9.0</version>
<exclusions>
<exclusion>
<groupId>org.broadinstitute.gatk</groupId>
......@@ -49,7 +49,7 @@
<dependency>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>gatk-queue-extensions-public</artifactId>
<version>3.6</version>
<version>0.9.0</version>
</dependency>
</dependencies>
......
biopet-extensions/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
</parent>
<modelVersion>4.0.0</modelVersion>
......
biopet-package/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
biopet-tools-extensions/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
</parent>
<modelVersion>4.0.0</modelVersion>
......
biopet-tools-package/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
</parent>
<modelVersion>4.0.0</modelVersion>
......
biopet-tools/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
......
biopet-utils/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
......
bump-version.sh
View file @ 1ef9b735
......@@ -21,8 +21,7 @@ if [ ! $1 ] ; then
exit 1
fi
for POM in `find $DIR -name "pom.xml"`
do
mvn -f $POM versions:set -DnewVersion=$1 -DgenerateBackupPoms=false
mvn -f $DIR/pom.xml versions:set -DnewVersion=$1 -DgenerateBackupPoms=false
done
carp/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
docs/examples/pom.xml
View file @ 1ef9b735
......@@ -22,7 +22,7 @@
<groupId>path.to.your</groupId>
<artifactId>MyProject</artifactId>
<version>0.8.0-SNAPSHOT</version>
<version>0.9.0</version>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
......
external-example/pom.xml
View file @ 1ef9b735
......@@ -27,7 +27,7 @@
<artifactId>ExternalExample</artifactId>
<!--TODO: replace version, for a new pipeline it's advised to start with '0.1.0-SNAPSHOT' -->
<version>0.8.0-SNAPSHOT</version>
<version>0.9.0</version>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
......@@ -56,19 +56,19 @@
<artifactId>BiopetCore</artifactId>
<!--TODO: replace version of pipeline to a fixed version -->
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
</dependency>
<dependency>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetExtensions</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
</dependency>
<dependency>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Shiva</artifactId>
<!--TODO: replace version of pipeline to a fixed version -->
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
</dependency>
</dependencies>
......
flexiprep/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
gears/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
......
generate-indexes/pom.xml
View file @ 1ef9b735
......@@ -26,7 +26,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
gentrap/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
gwas-test/pom.xml
View file @ 1ef9b735
......@@ -26,7 +26,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
kopisu/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
mapping/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<groupId>nl.lumc.sasc</groupId>
<name>Biopet</name>
<packaging>pom</packaging>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<modules>
<module>gatk</module>
......
sage/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
shiva/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
</parent>
<modelVersion>4.0.0</modelVersion>
......
tinycap/pom.xml
View file @ 1ef9b735
......@@ -21,7 +21,7 @@
<parent>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
</parent>
<modelVersion>4.0.0</modelVersion>
......
toucan/pom.xml
View file @ 1ef9b735
......@@ -24,7 +24,7 @@
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.9.0-SNAPSHOT</version>
<version>0.9.0-RC1</version>
<relativePath>../</relativePath>
</parent>
......
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