Skip to content

GitLab

B
biopet.biopet
Commit 1eb69dfa authored by Peter van 't Hof's avatar Peter van 't Hof Committed by GitHub
Browse files
Options

Merge branch 'develop' into fix-BIOPET-641

parents 58575df3 261ebe2a
Hide whitespace changes
Inline Side-by-side
Showing with 2 additions and 0 deletions
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @ 1eb69dfa
...@@ -230,6 +230,7 @@ class Flexiprep(val parent: Configurable) extends QScript with SummaryQScript wi ...@@ -230,6 +230,7 @@ class Flexiprep(val parent: Configurable) extends QScript with SummaryQScript wi
pipe.deps ::= fastqcR2.output pipe.deps ::= fastqcR2.output
pipe.deps ::= R1_in pipe.deps ::= R1_in
pipe.deps ::= R2_in.get pipe.deps ::= R2_in.get
pipe.nCoresRequest = Some(4)
pipe.isIntermediate = !keepQcFastqFiles pipe.isIntermediate = !keepQcFastqFiles
addSummarizable(pipe, "qc_cmd") addSummarizable(pipe, "qc_cmd")
add(pipe) add(pipe)
...@@ -239,6 +240,7 @@ class Flexiprep(val parent: Configurable) extends QScript with SummaryQScript wi ...@@ -239,6 +240,7 @@ class Flexiprep(val parent: Configurable) extends QScript with SummaryQScript wi
R1 = fqSync.outputFastq1 R1 = fqSync.outputFastq1
R2 = Some(fqSync.outputFastq2) R2 = Some(fqSync.outputFastq2)
} else { } else {
qcCmdR1.nCoresRequest = Some(2)
add(qcCmdR1) add(qcCmdR1)
R1 = qcCmdR1.output R1 = qcCmdR1.output
} }
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment