From 1eaad60f26913029dde459efbbaffa652402607c Mon Sep 17 00:00:00 2001
From: bow <bow@bow.web.id>
Date: Tue, 10 Feb 2015 09:52:27 +0100
Subject: [PATCH] Fix missing path separator in Flexiprep output
---
.../scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
index dc5972ab4..62c8292db 100644
--- a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
+++ b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
@@ -155,7 +155,7 @@ class Fastqc(root: Configurable) extends nl.lumc.sasc.biopet.extensions.Fastqc(r
"fastqc_data" -> "fastqc_data.txt")
.map {
case (name, relPath) =>
- name -> Map("path" -> (outputDir + relPath))
+ name -> Map("path" -> (outputDir + File.pathSeparator + relPath))
}
ConfigUtils.mapToJson(outputMap)
--
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