From 1d22fa442cf4925afd6e7b8873666ffc2bc75557 Mon Sep 17 00:00:00 2001 From: Peter van 't Hof Date: Mon, 24 Apr 2017 16:18:55 +0200 Subject: [PATCH] Rename config value --- .../scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala index 4968297ca..51df4e781 100644 --- a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala +++ b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala @@ -98,7 +98,7 @@ class Mapping(val parent: Configurable) extends QScript with SummaryQScript with /** Readgroup predicted insert size */ protected var predictedInsertsize: Option[Int] = config("predicted_insertsize") - val keepFinalBamFile: Boolean = config("keep_final_bam_file", default = true) + val keepFinalBamFile: Boolean = config("keep_mapping_bam_file", default = true) protected var paired: Boolean = false val flexiprep = new Flexiprep(this) -- GitLab