From 1d0235fe2f45f100af7866d575fc2abd2509da38 Mon Sep 17 00:00:00 2001
From: Sander van der Zeeuw <s.a.j.van_der_zeeuw@lumc.nl>
Date: Thu, 29 Jan 2015 15:12:44 +0100
Subject: [PATCH] bug fix in Carp pipeline
---
.../main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala b/public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala
index dfef64132..df58ab964 100644
--- a/public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala
+++ b/public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala
@@ -104,8 +104,8 @@ class Carp(val root: Configurable) extends QScript with MultiSampleQScript {
for ((sampleId, sample) <- samples) {
for (control <- sample.controls) {
- if (!samples.exists(_ == control))
- throw new IllegalStateException("For sample: " + sample + " this control: " + control + " does not exist")
+ if (!samples.contains(control))
+ throw new IllegalStateException("For sample: " + sampleId + " this control: " + control + " does not exist")
val macs2 = new Macs2CallPeak(this)
macs2.treatment = sample.bamFile
macs2.control = samples(control).bamFile
--
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