From 1cb942c6e32b19737975170f99eb581003a4511c Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 17 Feb 2015 14:35:51 +0100
Subject: [PATCH] Fix on adapters
---
.../nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
index 564bb4427..55f964451 100644
--- a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
+++ b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
@@ -74,7 +74,7 @@ class Cutadapt(root: Configurable) extends nl.lumc.sasc.biopet.extensions.Cutada
"num_reads_affected" -> stats("trimmed"),
"num_reads_discarded_too_short" -> stats("tooshort"),
"num_reads_discarded_too_long" -> stats("toolong"),
- "adapters" -> adapter_stats
+ "adapters" -> adapter_stats.toMap
)
}
--
GitLab