diff --git a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala index 564bb4427a87f65bf97ea06667a505219423cfcd..55f9644511dead6aa2cf8733752e14b6238dc07c 100644 --- a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala +++ b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala @@ -74,7 +74,7 @@ class Cutadapt(root: Configurable) extends nl.lumc.sasc.biopet.extensions.Cutada "num_reads_affected" -> stats("trimmed"), "num_reads_discarded_too_short" -> stats("tooshort"), "num_reads_discarded_too_long" -> stats("toolong"), - "adapters" -> adapter_stats + "adapters" -> adapter_stats.toMap ) }