Commit 1c4febed authored by pjvan_thof's avatar pjvan_thof
Browse files

Typos

parent cc2aa04f
...@@ -172,7 +172,7 @@ object FastqSync extends ToolCommand { ...@@ -172,7 +172,7 @@ object FastqSync extends ToolCommand {
val commandArgs: Args = parseArgs(args) val commandArgs: Args = parseArgs(args)
idSufixes = findR1R2Subfixes(commandArgs.refFastq1, commandArgs.refFastq2) idSufixes = findR1R2Suffixes(commandArgs.refFastq1, commandArgs.refFastq2)
val refReader = new FastqReader(commandArgs.refFastq1) val refReader = new FastqReader(commandArgs.refFastq1)
val AReader = new FastqReader(commandArgs.inputFastq1) val AReader = new FastqReader(commandArgs.inputFastq1)
...@@ -199,9 +199,9 @@ object FastqSync extends ToolCommand { ...@@ -199,9 +199,9 @@ object FastqSync extends ToolCommand {
* *
* @param fastqR1 input R1 file * @param fastqR1 input R1 file
* @param fastqR2 Input R2 file * @param fastqR2 Input R2 file
* @return subfix for (R1, R2) * @return suffix for (R1, R2)
*/ */
def findR1R2Subfixes(fastqR1: File, fastqR2: File): (String, String) = { def findR1R2Suffixes(fastqR1: File, fastqR2: File): (String, String) = {
val refReader1 = new FastqReader(fastqR1) val refReader1 = new FastqReader(fastqR1)
val refReader2 = new FastqReader(fastqR2) val refReader2 = new FastqReader(fastqR2)
val r1Name = refReader1.next().getReadHeader.split(" ").head val r1Name = refReader1.next().getReadHeader.split(" ").head
......
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