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biopet.biopet
Commits
1c4febed
Commit
1c4febed
authored
Jul 24, 2017
by
pjvan_thof
Browse files
Typos
parent
cc2aa04f
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
View file @
1c4febed
...
...
@@ -172,7 +172,7 @@ object FastqSync extends ToolCommand {
val
commandArgs
:
Args
=
parseArgs
(
args
)
idSufixes
=
findR1R2Su
b
fixes
(
commandArgs
.
refFastq1
,
commandArgs
.
refFastq2
)
idSufixes
=
findR1R2Su
f
fixes
(
commandArgs
.
refFastq1
,
commandArgs
.
refFastq2
)
val
refReader
=
new
FastqReader
(
commandArgs
.
refFastq1
)
val
AReader
=
new
FastqReader
(
commandArgs
.
inputFastq1
)
...
...
@@ -199,9 +199,9 @@ object FastqSync extends ToolCommand {
*
* @param fastqR1 input R1 file
* @param fastqR2 Input R2 file
* @return su
b
fix for (R1, R2)
* @return su
f
fix for (R1, R2)
*/
def
findR1R2Su
b
fixes
(
fastqR1
:
File
,
fastqR2
:
File
)
:
(
String
,
String
)
=
{
def
findR1R2Su
f
fixes
(
fastqR1
:
File
,
fastqR2
:
File
)
:
(
String
,
String
)
=
{
val
refReader1
=
new
FastqReader
(
fastqR1
)
val
refReader2
=
new
FastqReader
(
fastqR2
)
val
r1Name
=
refReader1
.
next
().
getReadHeader
.
split
(
" "
).
head
...
...
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