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Commit 1c4febed authored by pjvan_thof's avatar pjvan_thof
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Typos

parent cc2aa04f
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Showing with 3 additions and 3 deletions
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
View file @ 1c4febed
......@@ -172,7 +172,7 @@ object FastqSync extends ToolCommand {
val commandArgs: Args = parseArgs(args)
idSufixes = findR1R2Subfixes(commandArgs.refFastq1, commandArgs.refFastq2)
idSufixes = findR1R2Suffixes(commandArgs.refFastq1, commandArgs.refFastq2)
val refReader = new FastqReader(commandArgs.refFastq1)
val AReader = new FastqReader(commandArgs.inputFastq1)
......@@ -199,9 +199,9 @@ object FastqSync extends ToolCommand {
*
* @param fastqR1 input R1 file
* @param fastqR2 Input R2 file
* @return subfix for (R1, R2)
* @return suffix for (R1, R2)
*/
def findR1R2Subfixes(fastqR1: File, fastqR2: File): (String, String) = {
def findR1R2Suffixes(fastqR1: File, fastqR2: File): (String, String) = {
val refReader1 = new FastqReader(fastqR1)
val refReader2 = new FastqReader(fastqR2)
val r1Name = refReader1.next().getReadHeader.split(" ").head
......
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