Commit 1b6fca2c authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed config values

parent e66c1eec
......@@ -39,8 +39,8 @@ class HaplotypeCallerGvcf(val parent: Configurable) extends Variantcaller {
val genderAwareCalling: Boolean = config("gender_aware_calling", default = false)
val haploidRegions: Option[File] = config("hap̦loid_regions")
val haploidRegionsMale: Option[File] = config("haploid_regions")
val haploidRegionsFemale: Option[File] = config("haploid_regions")
val haploidRegionsMale: Option[File] = config("haploid_regions_male")
val haploidRegionsFemale: Option[File] = config("haploid_regions_female")
lazy val refernceSize = referenceDict.getReferenceLength
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