Skip to content
GitLab
Commit 1b6fca2c authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed config values

parent e66c1eec
Hide whitespace changes
Inline Side-by-side
shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/HaplotypeCallerGvcf.scala
View file @ 1b6fca2c
......@@ -39,8 +39,8 @@ class HaplotypeCallerGvcf(val parent: Configurable) extends Variantcaller {
val genderAwareCalling: Boolean = config("gender_aware_calling", default = false)
val haploidRegions: Option[File] = config("hap̦loid_regions")
val haploidRegionsMale: Option[File] = config("haploid_regions")
val haploidRegionsFemale: Option[File] = config("haploid_regions")
val haploidRegionsMale: Option[File] = config("haploid_regions_male")
val haploidRegionsFemale: Option[File] = config("haploid_regions_female")
lazy val refernceSize = referenceDict.getReferenceLength
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment