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biopet.biopet
Commits
1b6fca2c
Commit
1b6fca2c
authored
Apr 18, 2017
by
Peter van 't Hof
Browse files
Fixed config values
parent
e66c1eec
Changes
1
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/HaplotypeCallerGvcf.scala
View file @
1b6fca2c
...
...
@@ -39,8 +39,8 @@ class HaplotypeCallerGvcf(val parent: Configurable) extends Variantcaller {
val
genderAwareCalling
:
Boolean
=
config
(
"gender_aware_calling"
,
default
=
false
)
val
haploidRegions
:
Option
[
File
]
=
config
(
"hap̦loid_regions"
)
val
haploidRegionsMale
:
Option
[
File
]
=
config
(
"haploid_regions"
)
val
haploidRegionsFemale
:
Option
[
File
]
=
config
(
"haploid_regions"
)
val
haploidRegionsMale
:
Option
[
File
]
=
config
(
"haploid_regions
_male
"
)
val
haploidRegionsFemale
:
Option
[
File
]
=
config
(
"haploid_regions
_female
"
)
lazy
val
refernceSize
=
referenceDict
.
getReferenceLength
...
...
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