Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
1b34e7ea
Commit
1b34e7ea
authored
Feb 28, 2017
by
akaljuvee
Browse files
one log line
parent
807100a4
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/delly/DellyCaller.scala
View file @
1b34e7ea
...
...
@@ -52,6 +52,7 @@ class DellyCaller(val root: Configurable) extends BiopetCommandLineFunction with
required
(
input
)
+
createEmptyOutputIfNeeded
// when no variants are found then the tool doesn't generate the output file either, in Biopet it's needed that the empty file would be there
def
createEmptyOutputIfNeeded
=
Array
(
"c=$?"
,
"if [ $c -eq 0 ] && [ ! -f "
+
outputvcf
+
" ]; then"
,
"echo '##fileformat=VCFv4.2' > "
+
outputvcf
,
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment