@@ -138,8 +138,8 @@ For all the options, please see the corresponding documentation for the mapping
### Gender aware variantcalling
In Shiva and ShivaVariantcalling while using haplotypecaller_gvcf it is possible to do gender aware variantcalling. In this mode it required to supply bed files to define haploid regions (see config values).
- For males is `hap̦loid_regions` and `hap̦loid_regions_male` used.
- For females is `hap̦loid_regions` and `hap̦loid_regions_female` used.
- For males is `hap̦loid_regions` and `hap̦loid_regions_male`is used.
- For females is `hap̦loid_regions` and `hap̦loid_regions_female`is used.
The pipeline will use a union of those files. At least 1 file is required while using this mode.
