From 186db74deef0a65e8997d9524de664e387e0441e Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 26 Oct 2015 10:16:45 +0100
Subject: [PATCH] Fix summary key
---
.../biopet/pipelines/shiva/ShivaVariantcallingTrait.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
index 6259ef696..6eb2832c1 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
@@ -97,7 +97,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript with SampleLibraryTag with
gc.outputFile = new File(caller.outputDir, s"$namePrefix-genotype_concordance.${caller.name}.txt")
referenceVcfRegions.foreach(gc.intervals ::= _)
add(gc)
- addSummarizable(gc, s"$namePrefix-genotype_concordance_${caller.name}")
+ addSummarizable(gc, s"$namePrefix-genotype_concordance-${caller.name}")
})
}
add(cv)
@@ -116,7 +116,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript with SampleLibraryTag with
gc.outputFile = new File(outputDir, s"$namePrefix-genotype_concordance.final.txt")
referenceVcfRegions.foreach(gc.intervals ::= _)
add(gc)
- addSummarizable(gc, s"$namePrefix-genotype_concordance_final")
+ addSummarizable(gc, s"$namePrefix-genotype_concordance-final")
})
addSummaryJobs()
--
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