From 166d97de03ea3b462c1cf4be6569e1e1aa8aeb09 Mon Sep 17 00:00:00 2001
From: Ioannis Moustakas <i.moustakas@lumc.nl>
Date: Wed, 6 Jul 2016 18:00:23 +0200
Subject: [PATCH] Improved documentation
---
.../nl/lumc/sasc/biopet/tools/BedtoolsCoverageToCounts.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BedtoolsCoverageToCounts.scala b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BedtoolsCoverageToCounts.scala
index a1180a386..9cc8d76ba 100644
--- a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BedtoolsCoverageToCounts.scala
+++ b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BedtoolsCoverageToCounts.scala
@@ -27,10 +27,10 @@ object BedtoolsCoverageToCounts extends ToolCommand {
class OptParser extends AbstractOptParser {
opt[File]('I', "input") required () valueName "<file>" action { (x, c) =>
c.copy(input = x)
- }
+ } text "Coverage file produced with bedtools"
opt[File]('o', "output") required () unbounded () valueName "<file>" action { (x, c) =>
c.copy(output = x)
- }
+ } text "Output file name"
}
/**
--
GitLab