diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala index 60a76d8608c74aa51da3d5e858192c823f1427ce..db9ed0f7e3c4875afcf94babe19cd686783107de 100644 --- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala +++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala @@ -38,6 +38,8 @@ class MergeOtuMaps(val root: Configurable) extends BiopetCommandLineFunction wit var failuresFp: Option[File] = None + override def defaultCoreMemory = 4.0 + override def beforeGraph(): Unit = { super.beforeGraph() require(input.nonEmpty) diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/PickClosedReferenceOtus.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/PickClosedReferenceOtus.scala index 371752d378c22a22289cbf97addc55b75e1082c8..07fef8aef1ee831aa258555b2358660a396dea69 100644 --- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/PickClosedReferenceOtus.scala +++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/PickClosedReferenceOtus.scala @@ -33,7 +33,7 @@ class PickClosedReferenceOtus(val root: Configurable) extends BiopetCommandLineF var outputDir: File = null override def defaultThreads = 3 - override def defaultCoreMemory = 12.0 + override def defaultCoreMemory = 16.0 def versionCommand = executable + " --version" def versionRegex = """Version: (.*)""".r diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/SplitLibrariesFastq.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/SplitLibrariesFastq.scala index cbf010ca75dc849435ef7b790f1892fd7af53ea6..d9295dee037381a4ff0504f0a7bf465cebd0f6b7 100644 --- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/SplitLibrariesFastq.scala +++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/SplitLibrariesFastq.scala @@ -56,6 +56,8 @@ class SplitLibrariesFastq(val root: Configurable) extends BiopetCommandLineFunct def outputSeqs = new File(outputDir, "seqs.fna") + override def defaultCoreMemory = 4.0 + override def beforeGraph(): Unit = { super.beforeGraph() require(input.nonEmpty)