From 13be64ac67bf706893786c0448a36a52f99e5ae9 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 25 Aug 2016 11:32:01 +0200
Subject: [PATCH] Remove second exception
---
.../scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala | 2 --
1 file changed, 2 deletions(-)
diff --git a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
index 05c274925..264384b05 100644
--- a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
+++ b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
@@ -64,8 +64,6 @@ object ExtractAlignedFastq extends ToolCommand {
inStrings.map {
case ptn1(chr, start, end) if intFromCoord(end) >= intFromCoord(start) => new Interval(chr, intFromCoord(start), intFromCoord(end))
- case ptn1(chr, start, end) if intFromCoord(end) < intFromCoord(start) =>
- throw new IllegalStateException(s"end is higher then start: $chr:$start-$end")
case ptn2(chr, start) =>
val startCoord = intFromCoord(start)
new Interval(chr, startCoord, startCoord)
--
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