From 128aa21f1a2365b32b1ca4c9133e3aee4c577c0c Mon Sep 17 00:00:00 2001
From: bow <bow@bow.web.id>
Date: Sun, 8 Mar 2015 11:05:58 +0100
Subject: [PATCH] Add CollectRnaSeqMetrics summary to main Gentrap summary
---
.../scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala | 1 +
1 file changed, 1 insertion(+)
diff --git a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
index feece0c2a..8bdd6ede1 100644
--- a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
+++ b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
@@ -690,6 +690,7 @@ class Gentrap(val root: Configurable) extends QScript with MultiSampleQScript wi
add(sampleAlnJob)
// general RNA-seq metrics
add(collectRnaSeqMetricsJob)
+ addSummarizable(collectRnaSeqMetricsJob, "rna_metrics")
// add strand-specific jobs if defined
alnPlusStrandJobs.foreach(_.addAllJobs())
alnMinusStrandJobs.foreach(_.addAllJobs())
--
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