make it not set

11dbe4d5 · Sander Bollen · 7d77c4c1 · 11dbe4d5
Commit 11dbe4d5 authored Jun 10, 2016 by Sander Bollen
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biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala ...s/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala +1 -1

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--- a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
+++ b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
@@ -432,7 +432,7 @@ object VcfStats extends ToolCommand {
      else buffer += key -> (map + (value -> map.getOrElse(value, 0)))
    }

-    buffer += "QUAL" -> Map(0 -> 1)
+    buffer += "QUAL" -> Map("not set" -> 1)

    addToBuffer("SampleDistribution-Het", 0, found = false)
    addToBuffer("SampleDistribution-HetNonRef", 0, found = false)