From 1101daa722a8f4f9159f1213800de50f98b369dc Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 27 Oct 2015 15:29:55 +0100
Subject: [PATCH] Fix sample flag
---
.../scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
index fbfed09cd..c896c849e 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
@@ -257,7 +257,7 @@ trait ShivaTrait extends MultiSampleQScript with Reference {
}).toList)
lazy val variantcalling = if (config("single_sample_variantcalling", default = false).asBoolean) {
- Some(makeVariantcalling(multisample = true))
+ Some(makeVariantcalling(multisample = false))
} else None
/** This will add sample jobs */
--
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