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Mirrors
biopet.biopet
Commits
106b05f0
Commit
106b05f0
authored
Mar 10, 2017
by
Peter van 't Hof
Browse files
Fixed mapping front template
parent
dd813f33
Changes
1
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Inline
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mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/mappingFront.ssp
View file @
106b05f0
#import(nl.lumc.sasc.biopet.utils.summary.db.SummaryDb)
#import(nl.lumc.sasc.biopet.utils.summary.db.SummaryDb._)
#import(nl.lumc.sasc.biopet.utils.summary.db.SummaryDb.Implicts._)
#import(nl.lumc.sasc.biopet.core.report.ReportPage)
#import(scala.concurrent.Await)
#import(scala.concurrent.duration.Duration)
<%@ var summary: SummaryDb %>
<%@ var rootPath: String %>
<%@ var pipeline: String %>
<%@ var runId: Int %>
<%@ var sampleId: Option[Int] %>
<%@ var libId: Option[Int] %>
#{
val run = Await.result(summary.getRuns(runId = Some(runId)), Duration.Inf).head
val settings = summary.getSettingKeys(runId,
Right(pipeline)
,
val settings = summary.getSettingKeys(runId,
run.name
,
keyValues = Map(
"contigs" -> List("reference", "contigs"),
"species" -> List("reference", "species"),
...
...
@@ -19,13 +20,13 @@
}#
<table class="table">
<tbody>
<tr><th>Pipeline</th><td>${
pipelin
e}</td></tr>
<tr><th>Pipeline</th><td>${
run.nam
e}</td></tr>
<tr><th>Version</th><td>${run.version}</td></tr>
<tr><th>Last commit hash</th><td>${run.commitHash}</td></tr>
<tr><th>Output directory</th><td>${run.outputDir}</td></tr>
<tr><th>Reference</th><td>${settings.get("species")} - ${settings.get("name")}</td></tr>
<tr><th>Sample</th><td>${
sampleId
}</td></tr>
<tr><th>Library</th><td>${
libId
}</td></tr>
<tr><th>Sample</th><td>${
Await.result(summary.getSampleName(sampleId.get), Duration.Inf)
}</td></tr>
<tr><th>Library</th><td>${
Await.result(summary.getLibraryName(libId.get), Duration.Inf)
}</td></tr>
</tbody>
</table>
<br/>
...
...
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