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biopet.biopet
Commits
10385625
Commit
10385625
authored
Mar 13, 2017
by
Peter van 't Hof
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f1cf26d5
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
...ala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
+7
-7
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
10385625
...
@@ -106,13 +106,13 @@ trait ShivaReportTrait extends MultisampleMappingReportTrait {
...
@@ -106,13 +106,13 @@ trait ShivaReportTrait extends MultisampleMappingReportTrait {
/** Files page, can be used general or at sample level */
/** Files page, can be used general or at sample level */
//TODO: fix files pages
//TODO: fix files pages
// override def filesPage(sampleId: Option[Int] = None, libraryId: Option[Int] = None): ReportPage = {
// override def filesPage(sampleId: Option[Int] = None, libraryId: Option[Int] = None): ReportPage = {
// val vcfFilesSection = if (variantcallingExecuted) List("VCF files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp",
// val vcfFilesSection = if (variantcallingExecuted) List("VCF files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp",
// Map("sampleId" -> sampleId)))
// Map("sampleId" -> sampleId)))
// else Nil
// else Nil
// val oldPage = super.filesPage(sampleId, libraryId)
// val oldPage = super.filesPage(sampleId, libraryId)
// oldPage.copy(sections = oldPage.sections ++ vcfFilesSection)
// oldPage.copy(sections = oldPage.sections ++ vcfFilesSection)
// }
// }
/** Single sample page */
/** Single sample page */
override
def
samplePage
(
sampleId
:
Int
,
args
:
Map
[
String
,
Any
])
:
ReportPage
=
{
override
def
samplePage
(
sampleId
:
Int
,
args
:
Map
[
String
,
Any
])
:
ReportPage
=
{
...
...
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