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biopet.biopet
Commit 0d996e40 authored by pjvan_thof's avatar pjvan_thof
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Fixing job script

parent dda90b04
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biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
View file @ 0d996e40
...@@ -54,7 +54,7 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction => ...@@ -54,7 +54,7 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction =>
} }
writer.println("set -eubf") writer.println("set -eubf")
writer.println("set -o pipefail") writer.println("set -o pipefail")
writer.println(this.commandLine) writer.println(lines.mkString("\n"))
jobDelayTime.foreach(x => writer.println(s"sleep $x")) jobDelayTime.foreach(x => writer.println(s"sleep $x"))
writer.close() writer.close()
} }
......
gatk @ 677d7574
Compare a30ff57a...677d7574
Subproject commit a30ff57a56bee919a619190d43f22d3b8f9ef8d7 Subproject commit 677d757419f515779766b10149b0e92eff71e5b2
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