Commit 0c43aaf3 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Change temp files

parent 13689911
...@@ -24,7 +24,7 @@ class SamtoolsSort(val root: Configurable) extends Samtools { ...@@ -24,7 +24,7 @@ class SamtoolsSort(val root: Configurable) extends Samtools {
override def beforeGraph(): Unit = { override def beforeGraph(): Unit = {
super.beforeGraph() super.beforeGraph()
prefix = config("prefix", default = new File(Files.createTempDir(), output.getAbsolutePath)) prefix = config("prefix", default = new File(System.getProperty("java.io.tmpdir"), output.getName))
} }
def cmdLine = required(executable) + required("sort") + def cmdLine = required(executable) + required("sort") +
......
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