Commit 0c224d51 authored by akaljuvee's avatar akaljuvee

-

parent 3b7faccf
......@@ -58,9 +58,12 @@ trait ShivaReportTrait extends MultisampleMappingReportTrait {
override def pipelineName = "shiva"
override def additionalSections = super.additionalSections ++ (if (variantcallingExecuted) List("Variantcalling" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/shiva/sampleVariants.ssp",
Map("showPlot" -> true, "showTable" -> false)))
else Nil)
override def additionalSections = {
val params = Map("showPlot" -> true, "showTable" -> false)
super.additionalSections ++
(if (variantcallingExecuted) List("SNV Calling" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/shiva/sampleVariants.ssp", params)) else Nil) ++
(if (svCallingExecuted) List("SV Calling" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/shiva/sampleVariantsSv.ssp", params)) else Nil)
}
/** Root page for the shiva report */
override def indexPage = {
......
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