Commit 0986121f authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added gatk jar

parent 62fef674
......@@ -9,6 +9,7 @@ import org.broadinstitute.gatk.utils.commandline.{ Gather, Input, Output, Argume
trait CommandLineGATK extends BiopetJavaCommandLineFunction {
analysisName = "CommandLineGATK"
javaMainClass = "org.broadinstitute.gatk.engine.CommandLineGATK"
jarFile = config("gatk_jar")
/** Name of the tool to run */
@Argument(fullName = "analysis_type", shortName = "T", doc = "Name of the tool to run", required = true, exclusiveOf = "", validation = "")
......
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