Commit 0892321f authored by bow's avatar bow
Browse files

Style updates

parent 30ef4896
...@@ -89,11 +89,11 @@ class Hisat2(val root: Configurable) extends BiopetCommandLineFunction with Refe ...@@ -89,11 +89,11 @@ class Hisat2(val root: Configurable) extends BiopetCommandLineFunction with Refe
/* Scoring */ /* Scoring */
var ma: Option[Int] = config("ma") var ma: Option[Int] = config("ma")
var mp: Option[String] = config("mp") // TODO: should be (Int, Int) var mp: Option[String] = config("mp") // TODO: should be (Int, Int)
var sp: Option[String] = config("sp") // TODO: should be (Int, Int) var sp: Option[String] = config("sp") // TODO: should be (Int, Int)
var np: Option[Int] = config("np") var np: Option[Int] = config("np")
var rdg: Option[String] = config("rdg") // TODO: should be (Int, Int) var rdg: Option[String] = config("rdg") // TODO: should be (Int, Int)
var rfg: Option[String] = config("rfg") // TODO: should be (Int, Int) var rfg: Option[String] = config("rfg") // TODO: should be (Int, Int)
var scoreMin: Option[String] = config("score_min") var scoreMin: Option[String] = config("score_min")
/* Reporting */ /* Reporting */
......
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