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biopet.biopet
Commits
0892321f
Commit
0892321f
authored
Jun 02, 2016
by
bow
Browse files
Style updates
parent
30ef4896
Changes
1
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/hisat/Hisat2.scala
View file @
0892321f
...
...
@@ -89,11 +89,11 @@ class Hisat2(val root: Configurable) extends BiopetCommandLineFunction with Refe
/* Scoring */
var
ma
:
Option
[
Int
]
=
config
(
"ma"
)
var
mp
:
Option
[
String
]
=
config
(
"mp"
)
// TODO: should be (Int, Int)
var
sp
:
Option
[
String
]
=
config
(
"sp"
)
// TODO: should be (Int, Int)
var
mp
:
Option
[
String
]
=
config
(
"mp"
)
// TODO: should be (Int, Int)
var
sp
:
Option
[
String
]
=
config
(
"sp"
)
// TODO: should be (Int, Int)
var
np
:
Option
[
Int
]
=
config
(
"np"
)
var
rdg
:
Option
[
String
]
=
config
(
"rdg"
)
// TODO: should be (Int, Int)
var
rfg
:
Option
[
String
]
=
config
(
"rfg"
)
// TODO: should be (Int, Int)
var
rdg
:
Option
[
String
]
=
config
(
"rdg"
)
// TODO: should be (Int, Int)
var
rfg
:
Option
[
String
]
=
config
(
"rfg"
)
// TODO: should be (Int, Int)
var
scoreMin
:
Option
[
String
]
=
config
(
"score_min"
)
/* Reporting */
...
...
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