Skip to content

GitLab

Commit 0892321f authored by bow's avatar bow
Browse files
Options

Style updates

parent 30ef4896
Hide whitespace changes
Inline Side-by-side
Showing with 4 additions and 4 deletions
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/hisat/Hisat2.scala
View file @ 0892321f
......@@ -89,11 +89,11 @@ class Hisat2(val root: Configurable) extends BiopetCommandLineFunction with Refe
/* Scoring */
var ma: Option[Int] = config("ma")
var mp: Option[String] = config("mp") // TODO: should be (Int, Int)
var sp: Option[String] = config("sp") // TODO: should be (Int, Int)
var mp: Option[String] = config("mp") // TODO: should be (Int, Int)
var sp: Option[String] = config("sp") // TODO: should be (Int, Int)
var np: Option[Int] = config("np")
var rdg: Option[String] = config("rdg") // TODO: should be (Int, Int)
var rfg: Option[String] = config("rfg") // TODO: should be (Int, Int)
var rdg: Option[String] = config("rdg") // TODO: should be (Int, Int)
var rfg: Option[String] = config("rfg") // TODO: should be (Int, Int)
var scoreMin: Option[String] = config("score_min")
/* Reporting */
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment